Installation

Prerequisites when using conda:

$ conda create -n cubi-tk python=3.10
$ conda activate cubi-tk

Clone CUBI-TK and install:

$ git clone git@cubi-gitlab.bihealth.org:CUBI/Pipelines/cubi-tk.git
$ cd cubi-tk
$ pip install -e .

For building the manual or running tests you will need some more packages.

$ pip install -r requirements/develop.txt

Run tests

$ make test

Build manual

$ cd docs_manual
$ make clean html